Molecular epidemiology and characterization of human coronavirus in Thailand, 2012–2013
Identifieur interne : 001104 ( Main/Exploration ); précédent : 001103; suivant : 001105Molecular epidemiology and characterization of human coronavirus in Thailand, 2012–2013
Auteurs : Rapeepun Soonnarong [Thaïlande] ; Ilada Thongpan [Thaïlande] ; Sunchai Payungporn [Thaïlande] ; Chanpim Vuthitanachot [Thaïlande] ; Viboonsuk Vuthitanachot [Thaïlande] ; Preeyaporn Vichiwattana [Thaïlande] ; Sompong Vongpunsawad [Thaïlande] ; Yong Poovorawan [Thaïlande]Source :
- SpringerPlus [ 2193-1801 ] ; 2016.
Abstract
Coronavirus causes respiratory infections in humans. To determine the prevalence of human coronavirus (HCoV) infection among patients with influenza-like illness, 5833 clinical samples from nasopharyngeal swabs and aspirates collected between January 2012 and December 2013 were examined.
HCoV was found in 46 (0.79 %) samples. There were 19 (0.32 %) HCoV-HKU1, 19 (0.32 %) HCoV-NL63, 5 (0.09 %) HCoV-229E, and 3 (0.05 %) HCoV-OC43. None of the sample tested positive for MERS-CoV. The majority (54 %) of the HCoV-positive patients were between the ages of 0 and 5 years. HCoV was detected throughout the 2-year period and generally peaked from May to October, which coincided with the rainy season. Phylogenetic trees based on the alignment of the spike (
The data in this study provide an insight into the prevalence of the recent circulating HCoVs in the region.
Url:
DOI: 10.1186/s40064-016-3101-9
PubMed: 27625974
PubMed Central: 4999384
Affiliations:
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C" first="Chanpim" last="Vuthitanachot">Chanpim Vuthitanachot</name><affiliation wicri:level="1"><nlm:aff id="Aff3">Chum Phae Hospital, Khon Kaen, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Chum Phae Hospital, Khon Kaen</wicri:regionArea><wicri:noRegion>Khon Kaen</wicri:noRegion></affiliation></author><author><name sortKey="Vuthitanachot, Viboonsuk" sort="Vuthitanachot, Viboonsuk" uniqKey="Vuthitanachot V" first="Viboonsuk" last="Vuthitanachot">Viboonsuk Vuthitanachot</name><affiliation wicri:level="1"><nlm:aff id="Aff3">Chum Phae Hospital, Khon Kaen, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Chum Phae Hospital, Khon Kaen</wicri:regionArea><wicri:noRegion>Khon Kaen</wicri:noRegion></affiliation></author><author><name sortKey="Vichiwattana, Preeyaporn" sort="Vichiwattana, Preeyaporn" uniqKey="Vichiwattana P" first="Preeyaporn" last="Vichiwattana">Preeyaporn Vichiwattana</name><affiliation wicri:level="1"><nlm:aff 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Medicine,</institution><institution>Chulalongkorn University,</institution></institution-wrap>Bangkok, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Bangkok</wicri:regionArea></affiliation></author><author><name sortKey="Poovorawan, Yong" sort="Poovorawan, Yong" uniqKey="Poovorawan Y" first="Yong" last="Poovorawan">Yong Poovorawan</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.7922.e</institution-id><institution-id institution-id-type="ISNI">0000000102447875</institution-id><institution>Center of Excellence in Clinical Virology, Department of Pediatrics, Faculty of Medicine,</institution><institution>Chulalongkorn University,</institution></institution-wrap>Bangkok, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Bangkok</wicri:regionArea></affiliation></author></analytic><series><title level="j">SpringerPlus</title><idno type="eISSN">2193-1801</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p id="Par1">Coronavirus causes respiratory infections in humans. To determine the prevalence of human coronavirus (HCoV) infection among patients with influenza-like illness, 5833 clinical samples from nasopharyngeal swabs and aspirates collected between January 2012 and December 2013 were examined.</p></sec><sec><title>Results</title><p id="Par2">HCoV was found in 46 (0.79 %) samples. There were 19 (0.32 %) HCoV-HKU1, 19 (0.32 %) HCoV-NL63, 5 (0.09 %) HCoV-229E, and 3 (0.05 %) HCoV-OC43. None of the sample tested positive for MERS-CoV. The majority (54 %) of the HCoV-positive patients were between the ages of 0 and 5 years. HCoV was detected throughout the 2-year period and generally peaked from May to October, which coincided with the rainy season. Phylogenetic trees based on the alignment of the spike (<italic>S</italic>) gene sequences suggest an emergence of a new clade for HCoV-229E.</p></sec><sec><title>Conclusions</title><p id="Par3">The data in this study provide an insight into the prevalence of the recent circulating HCoVs in the region.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Auksornkitti, V" uniqKey="Auksornkitti V">V Auksornkitti</name></author><author><name sortKey="Kamprasert, N" uniqKey="Kamprasert N">N Kamprasert</name></author><author><name sortKey="Thongkomplew, S" uniqKey="Thongkomplew S">S Thongkomplew</name></author><author><name sortKey="Suwannakarn, K" uniqKey="Suwannakarn K">K Suwannakarn</name></author><author><name sortKey="Theamboonlers, A" uniqKey="Theamboonlers A">A Theamboonlers</name></author><author><name sortKey="Samransamruajkij, R" uniqKey="Samransamruajkij R">R Samransamruajkij</name></author><author><name 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Chongsrisawat</name></author><author><name sortKey="Poovorawan, Y" uniqKey="Poovorawan Y">Y Poovorawan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Van Elden, Lj" uniqKey="Van Elden L">LJ van Elden</name></author><author><name sortKey="Van Loon, Am" uniqKey="Van Loon A">AM van Loon</name></author><author><name sortKey="Van Alphen, F" uniqKey="Van Alphen F">F van Alphen</name></author><author><name sortKey="Hendriksen, Ka" uniqKey="Hendriksen K">KA Hendriksen</name></author><author><name sortKey="Hoepelman, Ai" uniqKey="Hoepelman A">AI Hoepelman</name></author><author><name sortKey="Van Kraaij, Mg" uniqKey="Van Kraaij M">MG van Kraaij</name></author><author><name sortKey="Oosterheert, Jj" uniqKey="Oosterheert J">JJ Oosterheert</name></author><author><name sortKey="Schipper, P" uniqKey="Schipper P">P Schipper</name></author><author><name sortKey="Schuurman, R" uniqKey="Schuurman R">R Schuurman</name></author><author><name sortKey="Nijhuis, M" uniqKey="Nijhuis M">M Nijhuis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zaki, Am" uniqKey="Zaki A">AM Zaki</name></author><author><name sortKey="Van Boheemen, S" uniqKey="Van Boheemen S">S van Boheemen</name></author><author><name sortKey="Bestebroer, Tm" uniqKey="Bestebroer T">TM Bestebroer</name></author><author><name sortKey="Osterhaus, Ad" uniqKey="Osterhaus A">AD Osterhaus</name></author><author><name sortKey="Fouchier, Ra" uniqKey="Fouchier R">RA Fouchier</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Thaïlande</li></country></list><tree><country name="Thaïlande"><noRegion><name sortKey="Soonnarong, Rapeepun" sort="Soonnarong, Rapeepun" uniqKey="Soonnarong R" first="Rapeepun" last="Soonnarong">Rapeepun Soonnarong</name></noRegion><name sortKey="Payungporn, Sunchai" sort="Payungporn, Sunchai" uniqKey="Payungporn S" first="Sunchai" last="Payungporn">Sunchai Payungporn</name><name sortKey="Poovorawan, Yong" sort="Poovorawan, Yong" uniqKey="Poovorawan Y" first="Yong" last="Poovorawan">Yong Poovorawan</name><name sortKey="Thongpan, Ilada" sort="Thongpan, Ilada" uniqKey="Thongpan I" first="Ilada" last="Thongpan">Ilada Thongpan</name><name sortKey="Vichiwattana, Preeyaporn" sort="Vichiwattana, Preeyaporn" uniqKey="Vichiwattana P" first="Preeyaporn" last="Vichiwattana">Preeyaporn Vichiwattana</name><name sortKey="Vongpunsawad, Sompong" sort="Vongpunsawad, Sompong" uniqKey="Vongpunsawad S" first="Sompong" last="Vongpunsawad">Sompong Vongpunsawad</name><name sortKey="Vuthitanachot, Chanpim" sort="Vuthitanachot, Chanpim" uniqKey="Vuthitanachot C" first="Chanpim" last="Vuthitanachot">Chanpim Vuthitanachot</name><name sortKey="Vuthitanachot, Viboonsuk" sort="Vuthitanachot, Viboonsuk" uniqKey="Vuthitanachot V" first="Viboonsuk" last="Vuthitanachot">Viboonsuk Vuthitanachot</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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